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SRX17786560: GSM6614967: Left-right 15 [y15]; Patiria miniata; RNA-Seq
1 PACBIO_SMRT (Sequel II) run: 1.1M spots, 2.5G bases, 1.1Gb downloads

External Id: GSM6614967_r1
Submitted by: pacbio
Study: Three dimensional sectioning and full length gene expression profiling of Patiria miniata
show Abstracthide Abstract
The affinity of the echinoderm pentaradial body plan with that of the ancestral bilateral symmetry remains one of the biggest zoological puzzle. Here, we revisited this classical zoological problem using RNA tomography and HCR in situ hybridization in the sea star Patiria miniata. Overall design: Young Patiria miniata (~2cm) sectioned into indiviual arms, each of which was cryo micro-sectioned into 8-22 sections across 3 sectionng dimensions (Proximo-disal, oral-aboral, and left-right) full length transcriptomic data was gathered on each section. Addionally HRC insitu hybridizations were performed to provide higher resolution information for specific developementally imporant genes.
Sample: Transcriptome of Patiria miniata generated from RNA tomography using three different juvenile arms
SAMN30501236 • SRS15312488 • All experiments • All runs
Organism: Patiria miniata
Library:
Name: GSM6614967
Instrument: Sequel II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA extracted using qiagen RNAeasy and modified Trizol protocol Iso-Seq Express Template Preparation protocol / SMRTbell Express Template Prep Kit 2.0
Runs: 1 run, 1.1M spots, 2.5G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR217925331,054,2832.5G1.1Gb2022-10-06

ID:
24705547

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